WE BREAK GENES TO SOLVE RARE DISEASES.
Our lab sits at the intersection of cell biology, genome engineering, and rare disease. We use CRISPR in Xenopus and human cells to engineer disease variants in living systems, mapping the path from variant to disease mechanism. If functional genomics is the future of precision medicine, this is where that future gets built.
RESEARCH
VISION
To be at the forefront of the cutting-edge field of FUNCTIONAL GENOMICS, enabling scientific curiosity, excellence in research, and groundbreaking discoveries to improve the clinical outcomes for babies born with heart, lung and brain defects.
WHAT IS FUNCTIONAL GENOMICS
Functional genomics is the science of uncovering how genes actually work in living systems, not just which genes are present, but how they control cellular behaviors and shape development. By integrating genome engineering, multi-omics, imaging, and computational analysis, we uncover how gene networks build the heart, lungs, and brain, and how their disruption leads to birth defects and disease- placing functional genomics at the very center of precision medicine as the bridge between genetic information and truly personalized diagnosis, prognosis, and therapy.
Functional genomics is at the leading edge of biomedical science because it combines big data with deep mechanistic understanding. As a trainee, you will:
Learn state-of-the-art methods like CRISPR screening, single-cell omics, and precision disease modeling.
Gain skills that span cell and developmental biology, human genetics, and systems biology.
Work on high-impact problems that bridge bench science with real-world medicine.
Be part of a collaborative and interdisciplinary team working to redefine how we study, diagnose, and ultimately treat complex human disease.
PROJECTS
CENTRIOLE-CILIA-Cytoskeleton
Microtubules play a central role in nearly every cellular process, from cell division and structural organization to intracellular transport and signaling. Our lab focuses on two specialized, microtubule-based structures: centrioles and cilia.
Centrioles are essential for centrosome assembly, organizing the cytoskeleton and mitotic spindles, ensuring accurate cell division and polarity. Cilia, on the other hand, are dynamic, antenna-like projections that are vital for both cellular signaling and motility across tissues. Disruption of either centrioles or cilia can have broad consequences, leading to a range of syndromic disorders, including congenital heart defects (CHD), primary ciliary dyskinesia (PCD), and neurodevelopmental diseases such as microcephaly and autism.
We study how centrioles and cilia are assembled, maintained, and regenerated using Xenopus multiciliated cells as our primary model. We combine CRISPR genome engineering, quantitative live imaging, electron microscopy, and mathematical modeling to uncover the molecular rules governing organelle biogenesis. This fundamental science program is the mechanistic foundation for everything else we do.
RARE DISEASE Genomic
Genetic sequencing can identify variants. It cannot always tell you what they mean. For families facing a rare disease diagnosis, a "variant of uncertain significance" is not an answer; it is a question mark that can follow them for years.
We take on that question. Using a multi-tier functional platform, including Xenopus organism-based screening, human cell validation, and AI-driven structural analysis like AlphaFold modeling and machine learning, we systematically test patient variants to determine whether they are disease-causing or benign. Computational predictions help prioritize which variants to test; experimental results improve our models. Our work covers both motile and sensory ciliopathies, addressing a wide range of diseases caused by cilia dysfunction.
This approach has already led to new disease gene discoveries, reclassified variants that confused diagnostic labs, and revealed how the same gene can cause different clinical outcomes in different tissues.
If you want to work at the intersection of cell biology, human genetics, and precision medicine, where your experiments directly impact patient diagnoses, this is the place.
RESOURCES
MICROSCOPY
NIKON AX-R confocal: This new state-of-the-art microscope is equipped with 8K Galvo and 2K resonant scanners, 4 solid-state laser lines (405, 488, 561, and 640), and 4 PMT detectors with 2 GaAsP detectors. The software capabilities include advanced 2D tracking of the cells or organelles, 3D measurement analysis, deconvolution, and tile scanning.
The LEICA SP8 confocal microscope: The microscope is built off a DMi8 inverted research microscope and comes equipped with a white light laser scan head that is tunable within the range of 470-670nm with up to eight laser lines; a 405nm laser; a filter-free spectral detector for up to five individually regulatable channels.
NIKON SMZ1270 Stereomicroscope: The lab has two sets of stereomicroscopes equipped with a camera and computer for high-speed imaging.
TOOLS
High-Throughput CRISPR-Cas9 and morpholino based screening
Imaging: Confocal and Super-resolution microscopy, live imaging, Scanning Electron Microscopy (SEM), Transmission electron microscopy (TEM), and Electron Tomography (ET)
“Omics”: Single cell/nuclei sequencing and proteomics
Computational biology: Mathematical modeling and machine learning
Mechanobiology: Biomechanical manipulations of cells and skin organoids.
MODELS
MEET THE TEAM
-

Saurabh Kulkarni
Assistant Professor
-

Dana Urbatsch
Lab manager
-

Angelo Arrigo
Graduate Student
-

Savanna Hinson
Graduate Student
-

Venkatraman Rao
Senior Postdoctoral Associate
-

Vani Narayan
Postdoctoral Associate
-

Victoria Hua
Undergraduate Researcher
-

Anburaj Jeyraj
Research Associate
AFFILIATIONS
DEVELOPMENTAL GENOMICS CENTER
The Developmental Genomics Center at UVA will bridge developmental biologists with genomic and clinical translational scientists across grounds and with nearby Inova Health System and the NIH NICHD. The Center aims to integrate genomic technologies and next-generation sequencing datasets from human and animal model systems to address cutting-edge research questions in cell and developmental biology.
CENTER FOR MEMBRANE AND CELL PHYSIOLOGY
UVA’s Center for Membrane and Cell Physiology strives to understand fundamental biological processes at the highest possible spatial and temporal resolution. Our ultimate goal is to use high-end imaging, structural, biophysical, and biological and chemical probe technologies to make impactful discoveries on understanding the causes, development, and cures of diseases ranging from cardiovascular to cancer to neurological and infectious diseases.
CHILD HEALTH RESEARCH CENTER
The center's mission is to support scientists engaged in basic and clinical research to discover innovative therapies for childhood diseases. We bridge the gap between the laboratory and the bedside with cutting-edge research that improves the lives of children.
GRADUATE PROGRAMS AND TRAINING GRANTS
The Kulkarni lab is affiliated with postdoctoral and graduate T-32 training grants supported by the National Institutes of Health at the University of Virginia. Post-doctoral and Ph.D. applicants who are interested in the Kulkarni lab may be good candidates for applying for financial support from these training grants.
CONTACT
Kulkarni lab
Department of Cell Biology
Department of Biology,
University of Virginia
Charlottesville, VA 22908
Email: sk4xq@virginia.edu
Phone No: +14342976833